# Version 1.3
# by Becky Ashton - Spiralrat Rattery
# Thanks to LeAnn Boardman - Rattie Rascals Rattery
# Thanks to Alicia Gangi - Myomorphia
# Thanks to Toyah - Hawthorn Rats

# NOTES
# This is optional text that is displayed after the user has chosen this
# genetics configuration from the 'Select Standard Genetics Configuration'
# window. This can be used as a way of telling people about details of their
# selected configuration e.g. limitations.
notes FANCY RAT GENETICS
notes
notes
notes Version 1.4
notes Updated for use with Breeders Assistant 4 by:
notes Sarah Easter - Lone Star Rats of Cetral Texas
notes
notes Major work contributed by Becky Ashton - Spiral Rat Rattery
notes Special thanks for their help to:
notes     -  LeAnn Boardman - Rattie Rascals Rattery
notes     -  Alicia Gangi - 6th Happiness Rodentry
notes     -  Toyah - Hawthorn Rats
notes
notes Version 1.5
notes Updated by LeAnn Boardman of Rattie Rascals Rattery 2006
notes
notes
notes If you make any changes to this file, please let the other contributors know,
notes as your contributions may be beneficial to others.
notes
notes If you have added any custom colors to Breeders Assistant and are receiving an error stating 
notes "Unable to determine gene rules" or something similar when attempting to use genetics, then you need to look below for the proper 
notes rules section (Agouti, Self, AOC, Albino) and add a line like "usefor CoatColour=New Color" so BA knows
notes to be able to use genetics on it.
        
[genes RatGenes]
sexsystem xy

# Genes for body type
gene Dumbo Du,du

# Genes for fur color
gene Albino C,ch,c
gene Agouti A,a
gene Chocolate B,b
gene Blue G,g
gene Mink M,m
gene Pearl Pe,pe
gene RussianBlue D,d
gene Silvering Si,si
gene Smoke Sm,sm

# Genes for eye color
gene PED P,p
gene RED R,r

# Genes for coat texture
gene Rex Re,re
gene Velveteen Cu,cu
gene Nude N,n
gene Hairless Hr,hr

# Genes for coat pattern
gene Spotting S,s

# Genotype selection rules
selectgenotype genes label="A gene (Agouti):" flags=ulgvy choices="\
   Agouti, true breeding:A,A|\
   Agouti, carries non-agouti:A,a|\
   Agouti, possibly carries non-agouti:A,?|\
   Non-Agouti:a,a"
selectgenotype genes label="B gene (Chocolate):" flags=ulgvy choices="\
   Standard, true breeding:B,B|\
   Standard, carries chocolate:B,b|\
   Standard, possibly carries chocolate:B,?|\
   Chocolate:b,b"
selectgenotype genes label="C gene (Albino):" flags=ulgvy choices="\
   Standard, true breeding:C,C|\
   Standard, carries albino:C,c|\
   Standard, carries colorpoint:C,ch|\   
   Standard, possibly carries albino/colorpoint:C,?|\
   Himalayan, carries colorpoint and albino:ch,c|\
   Siamese, true breeding:ch,ch|\
   Albino:c,c"
selectgenotype genes label="Cu gene (Velveteen):" flags=ulgvy choices="\
   Standard, true breeding:cu,cu|\
   Velveteen, carries standard:Cu,cu|\
   Velveteen, possibly carries standard:Cu,?|\
   Patchwork Hairless:Cu,Cu"
selectgenotype genes label="D gene (Russian Blue):" flags=ulgvy choices="\
   Standard, true breeding:D,D|\
   Standard, carries russian blue:D,d|\
   Standard, possibly carries russian blue:D,?|\
   Russian Blue:d,d"
selectgenotype genes label="Du gene (Dumbo):" flags=ulgvy choices="\
   Standard, true breeding:Du,Du|\
   Standard, carries Dumbo:Du,du|\
   Standard, possibly carries Dumbo:Du,?|\   
   Dumbo:du,du"
selectgenotype genes label="G gene (American Blue):" flags=ulgvy choices="\
   Standard, true breeding:G,G|\
   Standard, carries american blue:G,g|\
   Standard, possibly carries american blue:G,?|\   
   American Blue:g,g"
selectgenotype genes label="Hr gene (Hairless):" flags=ulgvy choices="\
   Standard, true breeding:Hr,Hr|\
   Standard, carries hairless:Hr,hr|\
   Standard, possibly carries hairless:Hr,?|\
   Hairless:hr,hr"
selectgenotype genes label="M gene (Mink):" flags=ulgvy choices="\
   Standard, true breeding:M,M|\
   Standard, carries mink:M,m|\
   Standard, possibly carries mink:M,?|\
   Mink:m,m"
selectgenotype genes label="N gene (Nude):" flags=ulgvy choices="\
   Standard, true breeding:N,N|\
   Standard, carries nude:N,n|\
   Standard, possibly carries nude:N,?|\
   Nude:n,n"
selectgenotype genes label="P gene (Pink-Eye Dilute):" flags=ulgvy choices="\
   Standard, true breeding:P,P|\
   Standard, carries PED:P,p|\
   Standard, possibly carries PED:P,?|\
   Pink-Eye Dilute:p,p"
selectgenotype genes label="Pe gene (Pearled):" flags=ulgvy choices="\
   Standard:pe,pe|\
   Pearled:Pe,pe|\
   Homozygous Pearled Possibly Lethal:Pe,Pe"
selectgenotype genes label="R gene (Red-Eye Dilute):" flags=ulgvy choices="\
   Standard, true breeding:R,R|\
   Standard, carries RED:R,r|\
   Standard, possibly carries RED:R,?|\
   Red-Eye Dilute:r,r"
selectgenotype genes label="Re gene (Rex):" flags=ulgvy choices="\
   Standard, true breeding:re,re|\
   Rex, carries Standard:Re,re|\
   Rex, possibly carries standard:Re,?|\
   Double Rex:Re,Re"     
selectgenotype genes label="S gene (Husky):" flags=ulgvy choices="\
   Standard, true breeding:s,s|\
   Husky, carries Standard:S,s|\
   Husky, possibly carries standard:S,?|\
   Husky, possible Lethal M/C:S,S"
selectgenotype genes label="Si gene (Silvering):" flags=ulgvy choices="\
   Standard, true breeding:Si,Si|\
   Standard, carries silvering:Si,si|\
   Standard, possibly carries silvering:Si,?|\
   Silvered:si,si"
selectgenotype genes label="Sm gene (Smoke):" flags=ulgvy choices="\
   Standard, true breeding:Sm,Sm|\
   Standard, carries smoke:Sm,sm|\
   Standard, possibly carries smoke:Sm,?|\
   Smoked:sm,sm"

# Select phenotype rules according to coat color
c,c goto Albino
(ch,ch or ch,c) goto AOC
(A,- or a,?) goto AgoutiColors
a,a goto SelfColors
B,- or b,b or b,? goto AgoutiColors
M,- or m,m or m,? goto AgoutiColors


[rules Albino]
baseon RatGenes
c,c assumed
c,c masks Agouti
c,c masks Chocolate
c,c masks Blue
c,c masks RussianBlue
c,c masks PED
c,c masks RED
c,c masks Silvering
c,c masks Smoke
usefor CoatColour=White

# Body Phenotype Expressed
du,du say Dumbo

# Carried Traits
Du,du carries Dumbo
R,r or r,r or r,? carries RED
P,p or p,p or p,? carries PED
M,m or m,m or m,? carries Mink
D,d or d,d or d,? carries Russian Blue
G,g or g,g or g,? carries Blue
Si,si or si,si or si,? carries Silvering
Sm,sm or sm,sm, or sm,? carries Smoked
N,n carries Nude
Hr,hr carries Hairless
Du,? carries possibly Dumbo
R,? carries possibly RED
P,? carries possibly PED
M,? carries possibly Mink
D,? carries possibly Russian Blue
G,? carries possibly Blue
N,? carries possibly Nude
Hr,? carries possibly Hairless

# Color Phentypes Expressed
c,c say Pink Eye White

# Coat Phenotypes Expressed
Re,re say Rex
Re,Re say Double Rex
Cu,cu say Velveteen
Cu,Cu say Double Velveteen
n,n say Nude
hr,hr say Hairless

[rules AOC]
baseon RatGenes
a,a assumed
ch,- assumed
usefor CoatColour=Seal Point Siamese
usefor CoatColour=Blue Point Siamese
usefor CoatColour=Himalayan

# Body Phenotype Expressed
du,du say Dumbo

# Carried Traits
Du,du carries Dumbo
R,r or r,? carries RED
P,p or p,? carries PED
M,m or m,? carries Mink
D,d or d,? carries Russian Blue
G,g or g,? carries Blue
Si,si or si,? carries Silvering
Sm,sm or sm,? carries Smoked
N,n or n,? carries Nude
Hr,hr or hr,? carries Hairless
Du,? carries possibly Dumbo
R,? carries possibly RED
P,? carries possibly PED
M,? carries possibly Mink
D,? carries possibly Russian Blue
G,? carries possibly Blue
N,? carries possibly Nude
Hr,? carries possibly Hairless

# Color Phenotypes Expressed
ch,ch or (ch,ch and (B,- or D,- or G,-)) and not (ch,ch and (p,p or r,r or g,g or d,d or b,b)) say Seal Point Siamese
ch,ch and b,b say Chocolate Point Siamese
ch,ch and d,d say Russian Blue Point Siamese
ch,ch and g,g say Blue Point Siamese
ch,c or (ch,c and (B,- or D,- or G,-)) and not (ch,c and (p,p or r,r or g,g or d,d or b,b)) say Himalayan
ch,c and b,b say Chocolate Point Himalayan
ch,c and d,d say Russian Blue Point Himalayan
ch,c and g,g say Blue Point Himalayan
((A,- or a,a) and (ch,ch or ch,c) and p,p) or ((ch,ch or ch,c) and p,p) say Pink Eye White
((A,- or a,a) and (ch,ch or ch,c) and r,r) or ((ch,ch or ch,c) and r,r) say Pink Eye White

# Coat Phenotypes Expressed
Re,re say Rex
Re,Re say Double Rex
Cu,cu say Velveteen
Cu,Cu say Double Velveteen
n,n say Nude
hr,hr say Hairless


[rules AgoutiColors]
baseon RatGenes
A,- assumed
C,- assumed
usefor CoatColour=Agouti
usefor CoatColour=Amber
usefor CoatColour=Blue Agouti
usefor CoatColour=Chinchilla
usefor CoatColour=Cinnamon
usefor CoatColour=Cinnamon Pearl
usefor CoatColour=Fawn
usefor CoatColour=Lynx
usefor CoatColour=Platinum Agouti
usefor CoatColour=Topaz
usefor CoatColour=Silver Fawn

# Body Phenotypes Expressed
du,du say Dumbo

# Carried Traits
Du,du carries Dumbo
(R,r or r,?) or (R,- and not m,m) carries RED
P,p or p,? carries PED
M,m or m,? carries Mink
D,d or d,? carries Russian Blue
G,g or g,? carries Blue
C,ch or c,ch or ch,? carries Siamese
Si,si or si,? carries Silvering
Sm,sm or sm,? carries Smoked
N,n or n,? carries Nude
Hr,hr or hr,? carries Hairless
Du,? carries possibly Dumbo
R,? carries possibly RED
P,? carries possibly PED
M,? carries possibly Mink
D,? carries possibly Russian Blue
G,? carries possibly Blue
N,? carries possibly Nude
Hr,? carries possibly Hairless

# Color Phenotypes Expressed
A,- and not (r,r or p,p or m,m or d,d or g,g or b,b) say Agouti
A,- and r,r and not (p,p or m,m or d,d or g,g or b,b) say Fawn
A,- and p,p and not (r,r or m,m or d,d or g,g or b,b) say Amber
A,- and b,b and not (r,r or p,p or m,m or d,d or g,g) say Cinnamon (chocolate based)
A,- and m,m and not (p,p or r,r or R,r or d,d or g,g or b,b) say Cinnamon (mink based)
A,- and d,d and not (p,p or r,r or m,m or g,g or b,b) say Russian Blue Agouti
A,- and g,g and not (p,p or r,r or m,m or d,d or b,b) say Blue Agouti
(A,- and g,g and d,d) and not (b,b or r,r or p,p or m,m) say Russian Silver Agouti
(A,- and b,b and m,m) and not (g,g or d,d or p,p or r,r) say Coffee Agouti(not confirmed)
(A,- and b,b and r,r) and not (d,d or g,g or m,m or p,p) say Topaz
(A,- and b,b and p,p) and not (g,g or r,r or d,d or m,m) say Silver Fawn
(A,- and d,d and r,r) and not (g,g or m,m or p,p or b,b) say Russian Blue Fawn
(A,- and d,d and p,p) and not (b,b or g,g or m,m or r,r) say No Common Name
(A,- and g,g and r,r) and not (d,d or b,b or m,m or p,p) say Blue Fawn
(A,- and g,g and p,p) and not (r,r or b,b or d,d or m,m) say Silver Agouti
(A,- and g,g and m,m) and not (b,b or d,d or p,p or r,r) say Platinum Agouti
(A,- and d,d and m,m) and not (b,b or g,g or p,p or r,r) say Russian Dove Agouti
(A,- and m,m and R,r) and not (b,b or g,g or d,d or p,p or r,r) say Havana Agouti
(A,- and m,m and r,r) and not (b,b or g,g or d,d or p,p or R,r) say Light Havana Agouti
(A,- and m,m and G,g) and not (b,b or g,g or d,d or p,p or R,r) say Lilac Agouti
(A,- and b,b and g,g) and not (r,r or d,d or m,m or p,p) say Opal
(A,- and b,b and d,d) and not (r,r or g,g or p,p or m,m) say European Lynx
A,- and Pe,pe say Cinnamon Pearl
(A,- and m,m) and (d,d and g,g)  say Pink Eye White Possible
(A,- and m,m) and (d,d and g,g and r,r) say Pink Eye White Possible
(A,- and m,m) and (g,g and r,r) say Pink Eye White Possible
si,si say Silvered
sm,sm say Smoked

# Coat Phenotypes Expressed
Re,re say Rex
Re,Re say Double Rex
Cu,cu say Velveteen
Cu,Cu say Double Velveteen
n,n say Nude
hr,hr say Hairless

# Coat Pattern Phenotypes Expressed
S,- say Husky


[rules SelfColors]
baseon RatGenes
usefor CoatColour=Beige
usefor CoatColour=Black
usefor CoatColour=Blue
usefor CoatColour=Blue Beige
usefor CoatColour=Buff
usefor CoatColour=Champagne
usefor CoatColour=Chocolate
usefor CoatColour=Coffee
usefor CoatColour=Havana
usefor CoatColour=Lilac
usefor CoatColour=Merle
usefor CoatColour=Mink
usefor CoatColour=Mocha
usefor CoatColour=Pearl
usefor CoatColour=Platinum
usefor CoatColour=Russian Blue
usefor CoatColour=Silver Black
usefor CoatColour=Silver Blue
usefor CoatColour=Silver Chocolate
usefor CoatColour=Silver Lilac
usefor CoatColour=Silver Mink
usefor CoatColour=Silver Russian Blue
a,a assumed
C,- assumed

# Body Phenotypes Expressed
du,du say Dumbo

# Carried Traits
Du,du carries Dumbo
(R,r or r,?) and not m,m carries RED
P,p or p,? carries PED
M,m or m,? carries Mink
D,d or d,? carries Russian Blue
G,g or g,? carries Blue
C,ch or c,ch or ch,? carries Siamese
Si,si or si,? carries Silvering
Sm,sm or sm,? carries Smoked
N,n or n,? carries Nude
Hr,hr or hr,? carries Hairless
Du,? carries possibly Dumbo
R,? carries possibly RED
P,? carries possibly PED
M,? carries possibly Mink
D,? carries possibly Russian Blue
G,? carries possibly Blue
N,? carries possibly Nude
Hr,? carries possibly Hairless

# Color Phenotypes Expressed
a,a and not (r,r or p,p or m,m or d,d or g,g or b,b) say Black
r,r and not (p,p or m,m or d,d or g,g or b,b) say Beige
p,p and not (r,r or m,m or d,d or g,g or b,b) say Champagne
b,b and not (r,r or p,p or m,m or d,d or g,g) say Chocolate
m,m and not (p,p or r,r or R,r or r,- or d,d or g,g or b,b) say Mink
d,d and not (p,p or r,r or m,m or g,g or b,b) say Russian Blue
g,g and not (p,p or r,r or m,m or d,d or b,b) say Blue
(g,g and d,d) and not (b,b or m,m or p,p or r,r) say Russian Silver
(b,b and m,m) and not (g,g or d,d or p,p or r,r) say Coffee(not confirmed)
(b,b and r,r) and not (g,g or m,m or d,d or p,p) say Buff
(b,b and p,p) and not (g,g or m,m or d,d or r,r) say Light Champagne
(d,d and r,r) and not (b,b or g,g or m,m or p,p) say Blue Beige
(d,d and p,p) and not (b,b or g,g or m,m or r,r) say Blue Champange
(g,g and r,r) and not (b,b or m,m or d,d or p,p) say Platinum (RED Based)
(g,g and p,p) and not (b,b or m,m or d,d or r,r) say Silver
(g,g and m,m) and not (b,b or d,d or p,p or r,r) say Platinum (Mink Based)
(d,d and m,m) and not (b,b or g,g or p,p or r,r) say Russian Dove
(m,m and r,r) and not (b,b or g,g or d,d or p,p) say Light Beige
(m,m and R,r or r,-) and not (b,b or g,g or d,d or p,p or r,r) say Havana
(m,m and G,g)and not (b,b or g,g or d,d or p,p or r,r) say Lilac
(b,b and g,g) and not (m,m or d,d or p,p or r,r) say Light Lavender/Lilac
(b,b and d,d) and not (g,g or m,m or p,p or r,r) say Lavender/Lilac
Pe,pe say Pearl
m,m and (d,d and g,g)  say Pink Eye White Possible
m,m and (d,d and g,g and r,r) say Pink Eye White Possible
m,m and (g,g and r,r) say Pink Eye White Possible
si,si say Silvered
sm,sm say Smoked

# Coat Phenotypes Expressed
Re,re say Rex
Re,re implies CoatType Rex
Re,Re say Double Rex
Cu,cu say Velveteen
Cu,Cu say Patchwork Hairless
n,n say Nude
hr,hr say Hairless

# Coat Pattern Phenotypes Expressed
S,- say Husky